As a
package, each component of adegenet is documented in help pages. As a
starting point, one can type
?adegenet in
R to get an overview of package.
The
following other ressources are available:
- the adegenet
manual (
pdf), which compiles all the
documentation of the package.
- the adegenet
tutorial (
pdf), which goes through the main
functionalities of the package. Regularly updated.
-
files required for some parts of the
tutorial
>
AFLP.txt:
a toy dataset reproducing AFLP data
>
haplo.txt:
a toy dataset reproducing haploid data
>
triplo.txt:
a toy dataset reproducing triploid data
-
worksOnyInDiploids.txt:
the list of
functions working
only for diploid genotypes
- a
sPCA tutorial (
pdf), showing how to use the
spatial Principal Component Analysis (Jombart et al. 2008)
- globaldiv summer school 2009 -
talk
-
practical course